GLocate is a HMM-based gene prediction program for rice. The Markov model parameters
are trained using rice full-length cDNAs and TIGR rice genome pseudomolecules.

Enter parameters and push "Search" button

  - The maximum sequence size is limited to 500kbp.
  - FASTA format and raw data format are supported.
  - A, T, G, C and N in the sequence are acceptable.(case insensitive and all whitespace characters are ignored)

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Example of GLocate output

GLocate (version 0.2)
Parameter matrix: Rice
Sequence name:
Sequence length: 100023
Date: November 5, 2004 3:50:59 PM JST

Gene #  Strand  Exon type       Start   End     Score
------  ------  ---------       -----   -----   -----
1       +       Internal        83      3024    187.54
1       +       Terminal        3238    3292    -0.5

2       -       Terminal        4124    4357    16.25
2       -       Internal        6077    6127    33.24
2       -       Internal        6471    6580    22.02
2       -       Internal        6914    7001    49.59
2       -       Initial         7090    7161    11.13
Gene # The predicted gene number.
Strand The DNA strand of the predicted gene.
Exon type The exon type: "Initial","Internal","Terminal" or "Single".
Start The start position of the predicted exon.
End The end position of the predicted exon.
Score The score of the predicted exon .
(a value between negative infinity and positive infinity)

Acknowledgements :
The development of this system was supported by a grant from
the Ministry of Agriculture, Forestry and Fisheries of Japan
(Rice Genome Project SY-SY1101).